Plot Heat Map of Event Amplitudes

Usage

plot_heatmap(df, filename, condition_names, max_amplitude = NULL)

Arguments

df

Data Frame or Tibble with the following columns:

sweep
amplitude
condition
stimulus
event index

filename

Character, name of the file.

condition_names

Character vector with condition names.

max_amplitude

Integer, maximum value to use for the heat map. If set less than the maximum amplitude in the data frame, the value will be changed and a warning is returned. Defaults to NULL and will automatically set the value to the df's max value.

Value

ggplot object

Details

A blank white space is used for missing events (amplitude == NA).

Examples

simple_df <-
  data.frame(
    sweep = rep(1:20, each = 2),
    amplitude = c(rnorm(20, 100, 20), rnorm(20, 50, 10)),
    condition = rep(c("control", "drug1"), rep(20, 2)),
    stimulus = rep(c(1:2), 20),
    event_index = rep(1, 40)
  )

plot_heatmap(
  df = simple_df,
  filename = "example",
  condition_names = c("control", "drug1")
)
#> Warning: plot_heatmap() 'max_amplitude' is NOT defined; 'max_amplitude' set to: 141.300497907184